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  • Facilitator: Thanks very much Peter and thank you all for coming. I should also thank the

  • Faculty of Science for giving Justin and I the opportunity to tell you a little bit about

  • our research this evening. Yeah, so letís get started. The ocean is arguably the earthís

  • largest habitat. If youíve ever seen a satellite picture or earth from space, itís a blue

  • plant. Thereís 70 per cent of ocean on our - excuse me, that was a bit fast.

  • So if we look at the surface area of the planet, its 500 million square kilometres. If we consider

  • the highest mountain and the deepest ocean trench - we already see some disparity there

  • - and if we consider the average land elevation of 840 metres and the average ocean depth,

  • we can do the maths pretty easily and know that the ocean forms the largest habitat for

  • life on earth. To Australia, as an island continent, the

  • oceanís very important. Our marine territory is larger than our land area. Itís relevant

  • for most of us in Australia because we live so close to the coast. Many Australians live

  • within 50 kilometres and use those coasts for their recreational and other amenities.

  • The ocean is incredibly valuable. The western rock lobster fishery, our largest fishery,

  • is worth up to $350 million a year. You might also be interested to know that our recreational

  • fishery is worth $2 billion dollars if it was sold. Tourism to the Great Barrier Reef

  • contributes over $5 billion to our economy each year and in New South Wales the marine

  • industry contributes $2 billion annually and itís important for jobs here in our local

  • region. Marine microbes do the work in the ocean.

  • Theyíre microscopic so not easily recognised but they constitute up to 90 percent of biomass,

  • of living biomass, in the ocean. Thatís roughly equivalent to 240 billion elephants. You consider

  • that in terms of size. What do they look like? Letís take a view - microscopically and zoom

  • that. This is a cyanobacterium called a Prochlorococcus. It typically grows in low nutrient water.

  • It is - I should say there that itís the most abundant photosynthetic organism in the

  • ocean. There are 10 to the power of 27 cells globally. Synechococcus is somewhat bigger

  • cyanobacterium. It also photosynthesises and is more found in nutrient-rich waters. An

  • Emiliana huxleyi is a coccolithophorids. Itís an organism that has these calcium carbonate

  • scales, which makes it fairly distinctive when you see it in water.

  • ll show you a picture of that a little later. This is a diatom example Fragilariopsis

  • Antarctica. As the name implies itís a polar organism grown below 50 degrees south typically.

  • Gymnodinium catenatum is a toxic dinoflagellate. These cells are somewhat larger, grow in coastal

  • systems and can cause problems for aqua culture and shellfish industries.

  • Lastly, Iíve provided two examples of - I guess theyíre microbes and microscopic as

  • single cells, but when they form these aggregations, here this is called a tuft and here a big

  • colony, this is Trichodesmium and this is Phaeocystis and they are macroscopic, you

  • can see those in the water. Collectively, these organisms are called Phytoplankton and

  • theyíre responsible for photosynthesis in the ocean just as we would consider land plants

  • here. We already know that there are rooted plants

  • in the ocean called seagrasses and you might have also heard about kelp forests. But overwhelmingly,

  • itís these small microbes that are responsible for most of the photosynthesis in the ocean.

  • These phytoplankton can grow and form large accumulations that are observable from space.

  • Here, this is a picture of Emiliana. As I explained earlier, it has these calcium

  • carbonate scales, which are highly reflective. This is the south coast of England and the

  • bloom is almost as large as that whole land area. This is a toxic dinoflagellate, here

  • blooming of the west coast of Tasmania and you can see it forms these what we call red

  • tides. That can be harmful for other organisms growing in the vicinity.

  • [PAUSE] What do they do? These microbes, these phytoplankton

  • are basically providing food for the rest of the food web. So plankton a microscopic

  • animals that consume phytoplankton and the zooplankton in turn are consumed by the higher

  • food webs, the larger animals in the ocean. Typically, our most productive oceanographic

  • systems are those in upwelling areas. Nutrients are brought to the surface of the

  • ocean when prevailing winds, parallel to the coast in this case, cause water to actually

  • move away from the coast and thatís replenished by deep ocean water. So thereís this circulation,

  • this uplift of water that brings nutrients with it, phytoplankton have the opportunity

  • to grow, they are consumed by zooplankton and they basically drive ocean production

  • and produce lots of fish for our marine fisheries.

  • Microbes are also critically important in the carbon cycle. They are basically converting

  • dissolved carbon dioxide in the ocean together with nutrients into particulate organic carbon

  • in the presence of sunlight. In doing so they also produce oxygen. This oxygen is really

  • critical for life on hearth. Humans wouldnít exist without oxygen. So itís the function

  • of these microbes that are actually allowing us to inhabit the earth.

  • This rate of conversion of dissolved or gaseous carbon dioxide into organic carbon is called

  • productivity. The rate of carbon fixation is what we typically measure in the ocean.

  • So weíll come back to that a little later. Each day more than a hundred million tonnes

  • of carbon are fixed in this way by these autotrophic photosynthetic microbes. The organism that

  • is the most abundant photosynthesiser in the ocean is responsible for 20 per cent of the

  • oxygen in the earthís atmosphere, a really significant proportion.

  • So just to summarise that or give you the comparison, the ocean is contributing about

  • half of global photosynthesis. Itís fixing about 50 per cent of carbon dioxide on our

  • planet annually. To show you than in a vertical perspective, here we have carbon dioxide,

  • diffusing into the surface of the ocean. It is taken up by photosynthesisers in the presence

  • of sunlight energy and in the presence of nutrients to form cells and these are then

  • consumed by the food web. Justin will talk further about the details

  • hidden behind this box that end up being very important to the fate of that carbon in the

  • ocean. But essentially, itís what happening here in the surface ocean that then determines

  • what amount of organic carbon gets delivered further down into the ocean sediments. This

  • is what we refer to as the biological pump. So the carbon dioxide in the surface is taken

  • up by the food web and organisms then are dying. Theyíre reproducing and dying as part

  • of their natural life cycles and they contribute then to the dead or decaying organic carbon,

  • this particulate organic carbon in the ocean. Itís comprised of dead phytoplankton cells,

  • zooplankton poo, which is these little oval dots and I guess the [tridal] remains of fish

  • and other larger organisms. Essentially that is slowly sinking through the ocean and some

  • of it reaches the ocean sediments and is buried there for millennia.

  • I do want to mention that diatoms, these organisms I illustrated earlier, and coccolithophorids

  • contribute to this vertical flux as we call it and actually may increase the ballast,

  • the weight of this material, and may cause it to sink faster. So it might matter if we

  • have a change in composition of phytoplankton in the ocean and that may change the rate

  • of sinking of this particulate carbon. Okay so yeah, looking at that in view, itís actually

  • - this biological pump is a natural carbon sequestration mechanism.

  • [PAUSE] So I guess in thinking about productivity

  • and the link between these photosynthetic microbes and climate, we now have very good

  • tools over large scales that can detect this productivity in the ocean. Thereís a satellite

  • sensor called SeaWiFS that was basically optimised to capture signals from the ocean and was

  • able to then quantify productivity quite accurately. Then we were able to link that to environmental

  • factors. This is a seminal study published in nature

  • several years ago that basically examined this productivity data on a global scale and

  • did this over a decade and considered the links between productivity and climate. Here

  • in the upper plot itís describing the pattern of sea surface temperature. Sea surface temperature

  • in red means itís hot, relatively, compared to blue which means itís cooler. In the middle

  • plot, it shows you changes in this primary production, this productivity.

  • This is nice because it actually - this third plot here - shows the change in productivity

  • over the 10-year time period that they did this observation. The parts of the ocean in

  • yellow indicate that with warming thereís a decrease in productivity. Okay, so a large

  • part of the Pacific Ocean here in the middle, when thereís increased warming thereís a

  • decrease in productivity. These observed decreases provide some indication of what will happen

  • with future warming. I want to zoom in now on Australia. To do

  • that I need to give you an oceanographic context. So weíre an island continent and unusual

  • in the global ocean. There are two warm tropical currents that move from north to south along

  • both costs. Typically, in other continents we see the opposite pattern here on the west

  • coast we see the currents move upwards, sorry, towards the north rather than towards the

  • south. Because these currents bring warm nutrient-poor

  • water, it really affects the oceanography in the region and the nutrient-poor water

  • means that we donít necessarily have a lot of productivity, especially on our west coast,

  • which would normally be a large area for upwelling. We know from long-term measurements at three

  • of the longest time series stations in the southern hemisphere - theyíve been collecting

  • data on ocean conditions from the 1940s - we know then from these long-term observations

  • that ocean circulation is changing. East Australia currently forms part of the

  • South Pacific gyre that is responding to changes in salt and temperature of the ocean and itís

  • speeding up. Itís increasing itís southward transport. The speed of this current is faster

  • in summer than it is in winter. So as a result, weíre seeing changes in the temperature profiles

  • in waters, particularly off Eastern Australia. Just to explain a little bit more about this

  • current, it forms in the Coral Sea, it intensifies in Northern New South Wales and at Smokey

  • Cape separates from the coast. Two-thirds of that flow moves across towards New Zealand

  • and the examining southward flow forms what we call eddies and coastal fingers. They can

  • move as far south as Tasmania. So these long-term data show as that the ocean

  • is warming. Hereve shown temperature over the time period 1940 to 2010 for these three

  • different locations. Rottnest Island is shown in red - this is the western station - shows,

  • letís call it a one degree percentary increase in temperature if we just plotted that linearly

  • over time that would be the average rise. Port Hacking, just south of Sydney, is showing

  • a similar rise in temperature, but certainly our most southern station here at Maria Island

  • off the east coast of Tasmania is showing the starkest increase in temperature indicative

  • of more East Australia current water moving southward. So now to link what these investigators

  • found in the global ocean and examining the Australian situation, we did a similar study

  • using the same optical sensor, satellite data. Over the same time period we did the same

  • analysis at Maria Island. What we see here, shown in this plot, is a growth rate of the

  • phytoplankton. So we take that as the difference in the amount of phytoplankton that might

  • have occurred over a three-monthly period in the spring and we see that over this decade

  • there has been a decline in the growth rate of those phytoplankton near Maria Island and

  • also a decline in the total amount of biomass of those microbes.

  • So it mirrors the global picture. Weíre seeing a decline in phytoplankton productivity and

  • increase in sea surface temperature. We know though that remote sensing only captures part

  • of the story. Itís looking at the surface layer of the ocean typically and not able

  • to capture any information at depth. So using other types of sensors that we put into the

  • ocean we can actually look at - excuse me, sorry - we can actually look at patterns in

  • the phytoplankton biomass with depth across large space scales.

  • I guess here similarly we have red as high amounts of phytoplankton and blue as low amounts

  • of phytoplankton. The first thing you might notice then is that we have this mid-range

  • - at 40 metres, we have this maximum chlorophyll. Itís certainly not all clustered up here

  • at the surface. The satellites then are typically only seeing something between zero and 20

  • metres. So thereís a large part of the picture that we still have yet to capture.

  • Just to explain what weíre using here, these are computer-guided underwater vehicles onto

  • which we can put different instrumentation including sensors that measure the amount

  • of phytoplankton in the water. This particular plot shows this transit of the glider from

  • north to south in the Sydney region some years ago. So weíre measuring productivity in the

  • ocean using oceanographic tools and Iím just showing you to estimate this rate of carbon

  • fixation this is a typical plot showing the change in carbon fixed with light intensity.

  • Iím summarising some data that was collected a couple of years ago on an oceanographic

  • voyage by our group and it shows a sea surface temperature plot indicating that weíre in

  • different water masses. Itís a very variable region of the ocean off New South Wales. This

  • red patch indicates the East Australia current, thereís a patch of really warm water relative

  • to the other water next to it and we examined the productivity at three different stations

  • indicative of those water masses. Here on the inner shelf coastal water we get

  • four point six units of productivity here in the East Australia current or just at its

  • edge we get one unit of productivity. But interestingly, when we were in the eddy, which

  • is basically mixing water from great depth and bringing it to the surface providing nutrients

  • for phytoplankton to grow in the surface, we have 14 units of productivity. So weíre

  • seeing a massive contribution perhaps of the eddies in stimulating productivity in this

  • region. [PAUSE]

  • The other thing thatís happened in the ocean over this time period from 1940 to today has

  • been a change in the amount of nutrients. If you remember itís not just the dissolved

  • carbon dioxide in the seawater thatís driving productivity, these cells require nutrients

  • and nitrogen and silicate are two major nutrients these guys need. So from 1940 to 2007 this

  • data set sows that firstly the nitrogen availability hasnít necessarily changed but thereís been

  • a huge decline in silicate. Silicate is essential for these diatoms to grow.

  • You remember I mentioned that theyíre important organisms that basically affect the way that

  • that particular organic carbon sinks into the ocean. So really, from 1970 when we first

  • started measuring silicate we see a potential for a great amount of decline in the potential

  • for diatoms to grow. We think thereís two things that may be happening to drive that

  • pattern, that decrease in silicate. The first is that silicate is introduced into

  • the ocean through weathering of rocks that comes from our continental land run-off. So

  • if thereís decreased rainfall across Eastern Australia then weíre likely to see decreased

  • silicate into the ocean. So this may be indicative of a drying continent. The second hypothesis

  • weíre going out to test is that the East Australia current water is actually going

  • to displace the water that exists on our continental shelf and it may contain low silicate and

  • itís basically driving this pattern - more EAC water, less silicate.

  • So our oceanographic work is really trying to answer this question. So to summarise then,

  • we have a long-term increase in temperature, particularly on our east coast. We have long-term

  • changes in nutrient availability and we have eddies that potentially affect productivity.

  • So this gives us great interest in studying this part of the ocean. We are now blessed

  • with a federally funded program to make more observations in the ocean.

  • This is called the Integrated Marine Observing System and itís funded until 2013 and itís

  • basically increased the number of instruments in the ocean by at least an order of magnitude.

  • So the Port Hacking station, which forms one of the longest time series, as I mentioned,

  • is based on a mooring now that basically is able to measure temperature at different depths

  • in the ocean and a whole bunch of other oceanographic parameters that we can use to better understand

  • the dynamics and productivity in that region. In October of this year UTS together with

  • other partners is going out into the ocean to investigate the EAC and the eddies it produces.

  • Iím going to let Justin now take you from my macro scale into the micro scale and uncover

  • the box. [PAUSE]

  • Facilitator 2: So as Martinaís described, these phytoplankton, photosynthetic microbes

  • are very important for carbon flux in our ocean and also controlling our food web. Iím

  • going to talk to you about another bunch of microbes in the ocean, the bacteria, specifically

  • the heterotrophic bacteria, which are the bacteria, which consume this carbon, which

  • the phytoplankton produce. So as Martina showed us, the phytoplankton

  • are at the base of the food web and they, along with the bottom parts of the food web,

  • control this biological pump, which is essential for the oceanís carbon cycle. So how do the

  • bacteria fit into all of this? So thereís two other parts to this story which we need

  • to consider when we want to look at the importance of bacteria.

  • One is when weíre considering phytoplankton photosynthesis, which Martina described earlier,

  • not all of their photosynthesis ends up being turned into phytoplankton biomass. In fact,

  • a significant proportion of the photosynthesis is released back into the water column in

  • the form of dissolved organic carbon. Now, this is one of the largest pools of carbon

  • on earth so itís very important in that global carbon budget.

  • But for a long time it was thought it was lost from the food web because these larger

  • animals canít consume dissolved forms of carbon. So the big question was what happened

  • to this carbon and how was it recycled? The second question is, what happens to all of

  • this material thatís being exported in the biological pump? Is it all reaching the bottom

  • of the ocean and are we getting a complete 100 per cent transfer of this carbon to the

  • ocean sediments? So the answer to both of these questions lies

  • in the activity of the bacteria in the ocean. So typically, when weíre swimming around

  • at Bondi or somewhere like that we donít like to think that the water weíre swimming

  • in is filled with microorganisms but in actual fact, every teaspoon of seawater contains

  • around 10 million bacteria and 100 million viruses.

  • So every mouthful of water that youíre swallowing when you get dumped by a wave is filled with

  • these guys. But luckily, most of them are quite benign so you donít have much to worry

  • about. But just note the numbers here - very large numbers in such a small volume of water.

  • If we go up to a larger volume, a slightly larger volume, a bucket of seawater, the number

  • of microbes within this bucket of seawater equate to a higher number of organisms than

  • the total number of humans that have ever lived on earth for the history of humankind.

  • So thatís within this very small volume - again, a large number. If we now consider the diversity

  • of these microbes - and weíll look at a litre of seawater in this case - recent estimates

  • indicate that a single litre of seawater will contain 20,000 different bacterial species.

  • This equates to double all of the species of bird, fish, mammal and reptile in Australia.

  • So as well as being abundant, theyíre very diverse and theyíre carrying out a number

  • of different processes, which are important for the function of the ocean. So if we take

  • a normal seawater sample and look at it under the microscope after scanning it with a DNA

  • stain weíll typically see something like this. Weíll use an epifluorescence microscope

  • that allows us to look at the DNA fluorescence of these organisms.

  • So these bright dots correspond to individual bacterial cells with these smaller dots corresponding

  • to viruses. Down here, we can see one of the phytoplankton cells like Martinaís been talking

  • about. So this might look a lot like stars in the night sky if we look out at night but

  • in actual fact, the total number of microbes in the ocean equate to more than 100 million

  • times more than the stars in the visible universe. So again, thereís a lot of them. So the next

  • question is what are they doing? Are they doing anything important or are they just

  • the oceanís garbage and breaking down the dead fish and organic matter and keeping things

  • clean? Or are they having a more important role?

  • [PAUSE] So letís start off with their role in the

  • food web. So as I mentioned, thereís this big pool of dissolved organic carbon and heterotrophic

  • bacteria are able to assimilate this carbon very efficiently. So we see a large percentage

  • of photosynthesis is actually directly rooted through into the bacteria. Now, this needs

  • to find itís way back into the food web so that Nemo can get some access to this carbon.

  • The way this happens is thereís another group of microscope zooplankton which graze upon

  • these heterotrophic bacteria and these are then grazed upon by the larger plankton. So

  • we can see that eventually this carbon gets back into the higher food web. This is whatís

  • known as a microbial loop. So we can this integrates the role of bacteria into the ocean

  • food web. What does this all mean for carbon cycling?

  • Well, one of the first things we need to consider is that during these processes these organisms

  • are respiring. So theyíre returning carbon dioxide back into the water and this can in

  • some cases make its way back into the atmosphere. So letís look at that in the role of the

  • biological pump. So Martina discussed the biological pump and its important role in

  • carbon flux in the ocean. We have our sinking poo and dead animals and

  • if we zoom in one of these we can see that these particles, which are often referred

  • to as marine snow particles because we have this constant flux of these small white particles

  • in the ocean, so here we can see a zoomed in image of the marine snow particle. These

  • particles are really rich in organic carbon, which is a good growth element for bacteria.

  • So if we look further under a microscope, and again staying with the DNA stain, weíll

  • see something that looks like this with each of these blue dots corresponding to a bacterium.

  • You can see that these particles become very heavily colonised by bacteria as they sink

  • through the ocean. These bacteria use enzymes to break down this particular carbon and then

  • they consume it, which actively returns the carbon to the food web.

  • It also leads to respiration on these particles and we have high levels of bacterial respiration

  • occurring, which is returning carbon dioxide back into the water. So what we get, instead

  • of having this clean flux of particulate organic carbon to the sea floor, we get respiration

  • returning carbon dioxide and this actively short circuits the biological pump. So you

  • can see that all of the good work that they phytoplankton perform is stopped by some of

  • these activities of the bacteria.

  • So this indicates that we must consider the role of bacteria in the ocean carbon pump

  • cycle. So as Martina suggested, we get influx of carbon dioxide into the ocean, but we also

  • get an efflux out from respiration within the food web and we now know that we really

  • need to consider the role of these very abundant microorganisms in respiration leading to the

  • increased flux in carbon dioxide. So what you can see is we get a balance between

  • ocean photosynthesis and respiration. This can change depending on parts of the ocean

  • and the microbial communities and this ultimately influences whether the ocean is a source or

  • a sink for carbon dioxide in different regions. [PAUSE] So how do we go about studying these

  • organisms? Well, typically, oceanographers go out on research voyages on big ships and

  • we take samples across large distances across scales of kilometres or hundreds of kilometres.

  • Weíll take samples in these types of bottles, which will often give us a water sample of

  • around five to 10 litres. As Martina suggested, we can also now use satellite imaging technology

  • to look at the distributions of some of the photosynthetic microbes.

  • So here we can see an image of the phytoplankton off the south-eastern coast of Australia and

  • we can see that we get these fairly patchy distributions of phytoplankton. But these

  • are very grand scales and if we think about the life of an individual microbe, theyíre

  • not really going to care much about whatís happening across these very large distances.

  • So some of my research is trying to look into what happens at the scale of the individual

  • microbes and how this could also be important for chemical cycling in the ocean. So the

  • scale of interests for an individual cell in the ocean is going to be on the order of

  • a fraction of an individual drop of seawater. So much smaller scales. What does life look

  • like for a bacteria in this kind of environment? What we have here is an artistís impression

  • of the world experienced by a marine bacteria. One of the things that stand out from this

  • is itís not a uniform homogenous environment, which is often thought of in traditional oceanographic

  • theory, that things below scales of a few metres are homogenous. What we can see is

  • that thereís a number of ecological processes that drive patchiness in resources.

  • So we have a zooplankton leaving an amino acid-rich trail of excretion behind it. We

  • have a phytoplankton cell here and, as I mentioned, they release a large part of their photosynthesis

  • back into the water as dissolved carbon and this can lead to a plume of dissolved carbon

  • around individual phytoplankton cells. Here we see a phytoplankton cell which has been

  • infected by a virus and has now burst apart releasing all of the organic material within

  • this particle, within this cell, into the water column and this pulse release of chemicals.

  • Here we see one of these sinking marine snow particles, which has been colonised by bacteria

  • and are breaking it down with their enzymes and thereís actually a leeching of organic

  • material into the trail behind this sinking particle. So we get these hot spots of chemicals

  • in the water column, both in particulate and dissolved form, and itís possible that bacteria

  • can use behavioural foraging responses to take advantage of these patches in the same

  • way as larger organisms might take advantage of patches in terrestrial environments.

  • But to study these types of processes we need to consider this disconnection between these

  • oceanographic sampling processes and the ecology of these microbes. So as I mentioned, we take

  • these large volume samples but 10 litre volumes arenít going to allow us to look at processes

  • occurring within individual drops of seawater. So using these types of processes to look

  • at these dynamics in the ocean isnít matching. So one of the things we did was designed our

  • own micro scale sampling devices and here we can see one of these, which simply composed

  • of an array of 100 syringes which have been modified to each take in 50 microliter volume.

  • So these are taking in volumes, which are more like an individual drop of water, and

  • we deploy this in the water column and itís spring-loaded so we can take this sample at

  • any depth and then look at the special distributions of bacteria across these small scales.

  • So as I showed earlier, across these scales of tens to hundreds of kilometres we can see

  • these patchy distributions driven by large-scale oceanographic phenomenon. But what happens

  • when we look at the very small scales? What we see is we also find these very patchy distributions

  • of bacteria but note the scale in this plot, itís now millimetres.

  • So weíre looking at very small scales and we start to get these hotspots of bacterial

  • abundance indicating that they may be showing some of the behaviour that we saw in the artistís

  • impression. If we then look at the relative amounts of metabolically active bacteria in

  • the sample and we can see that thereís also hotspots in bacterial activity. So here we

  • can see the relative numbers of active bacteria and we get these hotspots where we might expect

  • to find increased carbon uptake rates and respiration rates indicating that thereís

  • these micro scale processes which could play an important role in the chemical cycling.

  • So whatís driving these patters we observe in the environment? One potential mechanism

  • behind these patterns is the behavioural response or the chemotactic response which allows cells

  • to respond to these chemicals. So again, weíre faced with the challenge of studying processes

  • at very small scales. In this case we want to look at the behaviour of the organisms

  • but these are occurring across very small distances and short timeframes.

  • So we used a relatively new technique called microfluidics to try to look at some of the

  • behaviours of these microbes within a patchy seascape. So microfluidics involves creating

  • these very small chips into which we can put complex channels and structures and what we

  • can see here is a microfluidic channel. This is on the stage of a microscope.

  • So here we can see the objective lens on the microscope so you can see the small size of

  • these structures. Hereís a schematic diagram of the microfluidic channel that weíve been

  • using. To give you an idea of the dimensions, this is about two centimetres long, three

  • millimetres wide and 50 micrometres deep. The two main points of this channel is that

  • we have these inlet points, one at the back here where we can inject the bacteria into

  • the channel and the second inlet point here, which is connected to this 100-micrometre

  • wide micro injector. With this we inject our band of organic substrates

  • to simulate these types of micro scale patches we might see in the environment. We then use

  • video microscopy to track the swimming paths of individual bacteria with the objective

  • to see whether they are able to respond to these micro scale patches and obtain higher

  • exposure to the organic carbon. So we performed a series of experiments using this setup.

  • Some of the datall show you today is with the marine bacteria pseudo-autonomous haloplanktis

  • and we looked at its behavioural response to patches of dissolved organic carbon and

  • in this case it was the products of phytoplankton species. So as I mentioned earlier, a lot

  • of these micro scale patches are associated with phytoplankton in the ocean.

  • What we can see here is across one of our microfluidic channels and here we can see

  • the band that we inject of the dissolved organic carbon and we can visualise that by adding

  • a fluorescent stain to the patch. Then what we want to do is look at the behavioural response

  • of the bacteria, which we measure with video microscopy and image analysis techniques,

  • and here we can see the swimming paths of individual bacteria within our channel.

  • So each one of these little white lines corresponds to the swimming track of an individual bacteria.

  • We see within a very short time we saw this within a few seconds, we get this really strong

  • accumulation of bacteria in the middle of the channel corresponding with this patch

  • of nutrients indicating that they can both sense and then direct their movement in response

  • to this high food patch for them. This accumulation of cells persisted for several

  • minutes until the nutrients were taken up or diffused out and we can see that after

  • 20 to 25 minutes we get back to a more homogenous distribution of the bacteria. So what does

  • this type of swimming and foraging behaviour give the bacteria in terms of an advantage

  • in the food that they may receive? So we - to look into this, we compared the

  • distribution of the bacteria in these experiments to the distribution of the nutrients as they

  • diffused out and then compared that to the distribution of a population of randomly distributed

  • nonmotile bacteria to calculate the gain in nutrient exposure. We found that for the marine

  • bacteria corresponding to this blue line they received a gain of around three-fold in their

  • exposure and uptake of the carbon source indicating that this type of foraging response would

  • provide them with a competitive advantage over other bacteria in the water column.

  • Here we can see, interestingly, we performed the same experiment with E.coli, the stomach

  • bacteria and we see that it performs a lot more poorly than the marine bacteria indicating

  • that the marine bacteria are well adapted to take advantage of these ephemeral small-scale

  • events in the ocean. What does this mean for carbon cycling? Well we can expect to see

  • accelerated carbon cycling rates at the base of the food web.

  • [PAUSE] So what does this mean for the microbial food

  • web in the ocean? As I described earlier, these bacteria are eaten by micro zooplankton,

  • which is important for shifting this carbon into Nemo. So if we get these patches of bacteria

  • occurring in the ocean, how do their predators respond? So we performed the same experiment

  • using the microfluidic channel. But in this case we had a patch of the heterotrophic

  • bacteria and we looked at one of their grazers or their predators, a flagellate called [Neobodadesignas

  • unclear] and looked at their foraging response and once again found that they concentrated

  • their swimming behaviour corresponding with the position of the bacterial patch. The bacteria

  • form a patch in response to the dissolved substrates and then their predators follow

  • them in and increase their grazing rates upon them by increasing their grazing efficiency

  • within this localised patch of food. This could eventually lead to an accelerated

  • transfer of carbon through the base of the food web. So in the same way that these larger

  • organisms, these dolphins are responding to a patch in prey resource, so thereís this

  • localised patch of food and theyíre concentrating their foraging behaviour to take advantage

  • of this patch we can see that microbes use the same types of behaviours in the ocean.

  • So what does all this mean for the carbon cycle? Well you can see that these micro scale

  • processes influence the activity and behaviour of bacteria in the ocean and by actively taking

  • advantage of these patches, it might influence carbon turnover rates. This could ultimately

  • have an effect on bulk carbon flux rates in the ocean and influence the ocean carbon cycle.

  • So that means that processes occurring across these very small scales could ultimately have

  • an influence on the processes which influence our climate. Sove described some of the

  • potential effects that microbes could have on our climate and on the important chemical

  • cycles for our climate but if we predict that there might be climate change in the next

  • few years, what are some of the potential effects of this on the microbes themselves?

  • So as Martina described earlier, thereís evidence that increased water temperatures

  • can decrease phytoplankton photosynthesis. So this will obviously have an effect on the

  • biological pump. But this can be compounded by the fact that increased water temperatures

  • also increase the bacterial activity and respiration rates.

  • So itís been suggested and shown in some experiments that this increase in bacterial

  • respiration associated with increased temperature may weaken the biological pump and weíll

  • find that we get a shift in this balance between photosynthesis and respiration in the balance

  • of respiration. What this means is that more CO2 could be released from parts of the ocean

  • than are absorbed and we get this positive feedback effect where atmospheric CO2 levels

  • could be increased further. Another predicted effect of future climate

  • change on the marine microbes is we might expect to find more nasty bacteria having

  • more significant effects in our ocean environments. So one case is cholera, which is a disease

  • which has affected people, particularly in third world countries and over the last several

  • decades has been responsible for the deaths of tens of thousands of people.

  • A vibrio cholera is associated with the marine bacteria vibrio cholera, which is an aquatic

  • bacteria and the growth of this bacteria has been shown to be increased in higher temperatures.

  • Additionally, if we get increased water sea level in low lying regions such as Bangladesh,

  • we might expect to see bigger influxes of the water into environments where there are

  • people living and we could expect to see increases in cholera outbreaks due to these effects

  • of climate change. So just to sum up, marine microbes are the

  • most abundant and diverse organisms in the ocean. They are responsible for around 50

  • per cent of global photosynthesis. So for us this means on average half of every breath

  • of oxygen we breathe in is derived from the activity of these guys. They form the foundation

  • of ocean productivity, which has an influence on marine fisheries yields, and this is obviously

  • important for the human population because we gain more than 15 per cent of our protein

  • in our diet from fish. Microbes are also important for driving the

  • important chemical cycles in the ocean which can ultimately mediate our climate. So as

  • weíve described today, Martina showed that microbes can be influenced by large-scale

  • processes across oceanographic provinces and across regions of hundreds of kilometres but

  • we can also see that microbes are influenced by processes occurring more at the scale of

  • the organisms themselves. Weíve also seen that microbes can influence

  • climate and may also be influenced by climate change and this indicates that there may be

  • unforeseen feedback effects if we get a climate change scenario. This is some of the research

  • which is being conducted at our group here at UTS C3 where weíre looking at different

  • components of this to try to get a handle on how climate change may influence some of

  • these processes. So with that, Iíll thank you for your attention

  • and Martina and I will be happy to take any questions.

Facilitator: Thanks very much Peter and thank you all for coming. I should also thank the

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UTS科學聚焦。海洋微生物,海洋的命脈?海洋的命脈? (UTS Science in Focus: Marine Microbes: The Ocean's Lifeblood?)

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    richardwang 發佈於 2021 年 01 月 14 日
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